The Institute of Measurement of the Slovak Academy of Sciences has 5 scientific departments:
- Department of Optoelectronic Measuring Methods
- Department of Magnetometry
- Department of Theoretical Methods
- Department of Imaging Methods
- Department of Biomeasurements
The support and administrative units of the institute consist of:
- Innovation and Instrument Technology Development Unit
- Economics and Administration Unit
- Editorial Office of the Measurement Science Review
- Library
- Secretariat of the Director